AURA Biomedical: 3D Proteins

AURA Biomedical brings public biomedical databases and interactive 3D structure viewing into one clean research workspace. Search a protein target and see its structure, chemistry, safety signals and clinical trial landscape side by side, without hopping between a dozen websites.

Built for scientists, students, educators and curious learners.

WHAT YOU CAN DO

• Explore proteins in 3D: Rotate, zoom and restyle interactive cartoon models. Compare an AlphaFold predicted structure against an experimental RCSB PDB structure in a dual overlay.

• Read a target summary at a glance: A single research summary view pulls together bioactivity, tissue expression, safety reports and clinical trial progress.

• Check drug-likeness: ADMET profile and Lipinski rule-of-five spider chart covering molecular weight, LogP, H-bond donors and acceptors, and polar surface area.

• Review safety reports: Browse OpenFDA adverse event data, including reaction counts, hospitalization and outcome ratios and demographic breakdowns. Export results to CSV.

• Follow clinical trials: See study status, phase distributions, sponsors and historical outcomes from ClinicalTrials.gov.

• Search sequences: Look up an amino acid sequence or UniProt accession to find homologous proteins and identity matches in the BLAST explorer.

• Study genes and tissues: View Ensembl gene loci, transcript isoforms, gnomAD constraint scores and GTEx tissue expression.

• Compare leads side by side: A color-coded heatmap lines up multiple targets and compounds across the metrics that matter to you.

• Save your work: Keep searches and screening library items so you can pick up where you left off.

LIVE DATA FROM TRUSTED PUBLIC SOURCES

UniProtKB, RCSB PDB, AlphaFold DB (EMBL-EBI), OpenFDA, ClinicalTrials.gov, ChEMBL, PubChem, GTEx, Ensembl, gnomAD and Europe PMC.

WHY RESEARCHERS AND STUDENTS LIKE IT

• Clear, dark-mode interface designed for long sessions
• Smooth interactive 3D rendering powered by 3Dmol.js
• No advertising networks
• Works on your phone, so you can check a target anywhere

PRIVACY

AURA does not contain advertising networks. See our privacy policy at redplanetapps.com/aura-privacy for details on how data is handled.

IMPORTANT

AURA Biomedical is designed for scientific research, education and reference only. It is not a medical device and is not intended for diagnosis, treatment, clinical decision-making or patient care. Data comes from third-party public databases and may be incomplete or out of date; always confirm findings against the original source.

Questions or ideas? Write to us at lab@redplanetapps.com.

Recent changes:
Initial release of AURA Biomedical Engine:
• AI Target Feasibility Score & Executive Intelligence Briefing
• 3D Protein Conformer Superposition & AlphaFold/PDB Viewer
• ADMET & Lipinski Rule Drug-Likeness Spider Chart
• OpenFDA Adverse Event Safety Analytics & Reaction Logs
• ClinicalTrials.gov Intelligence & Outcome Tracking
• Sequence Homology & BLAST Explorer Tool